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生命基礎科学

主な研究業績

学術論文

2025

  1. Honda S*, Yokoyama A and Suzuki N
    RNA editing of genomic neighbors controls antiviral response in fungi
    Cell Host & Microbe  33(4) 545-559 (2025) 
    *Corresponding author  
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2023

  1. Honda S*, Yokoyama A and Suzuki N
    RNA Editing of Genomic Neighbors Controls Antiviral Response in Fungi
    Sneak Peek  (2023)  Preprint (Cell Press papers under review)
    *Corresponding author

2020

  1. Courtney AJ, Kamei M, Ferraro AR, Gai K, He Q, Honda S and Lewis ZA
    Normal Patterns of Histone H3K27 Methylation Require the Histone Variant H2A.Z in Neurospora crassa
    Genetics 216(1) 51-66 (2020)
  2. Storck WK, Bicocca VT, Rountree MR, Honda S, Ormsby T and Selker EU
    LSD1 prevents aberrant heterochromatin formation in Neurospora crassa
    Nucleic acids research 48(18) 10199-10210 (2020)
  3. Honda S, Eusebio-Cope A, Miyashita S, Yokoyama A, Aulia A, Shahi S, Kondo H and Suzuki N
    Establishment of Neurospora crassa as a model organism for fungal virology
    Nature communications 11(1) 5627-5627 (2020)

2019

  1. Klocko AD, Uesaka M, Ormsby T, Rountree MR, Wiles ET, Adhvaryu KK, Honda S and Selker EU
    Nucleosome Positioning by an Evolutionarily Conserved Chromatin Remodeler Prevents Aberrant DNA Methylation in Neurospora
    Genetics 211(2) 563-578 (2019)

2018

  1. Jamieson K, McNaught KJ, Ormsby T, Leggett NA, Honda S and Selker EU
    Telomere repeats induce domains of H3K27 methylation in Neurospora
    Elife e31216 (2018)
  2. Bicocca VT, Ormsby T, Adhvaryu KK, Honda S, Selker EU
    Telomere repeats induce domains of H3K27 methylation in Neurospora
    Elife e41497 (2018)

2016

  1. Klocko AD, Ormsby T, Galazka JM, Leggett N, Uesaka M, Honda S, Freitag M and Selker EU
    Normal chromosome conformation depends on subtelomeric facultative heterochromatin in Neurospora crassa
    Proceedings of the National Academy of Sciences 113(52):15048-15053 (2016)
  2. Honda S, Bicocca VT, Gessaman JD, Rountree MR, Yokoyama A, Yu EY, Selker JM and Selker EU
    Dual chromatin recognition by the histone deacetylase complex HCHC is required for proper DNA methylation in Neurospora crassa
    Proceedings of the National Academy of Sciences 113 (41), E6135–E6144
  3. Galazka JM, Klocko AD, Uesaka M, Honda S, Selker EU and Freitag M
    Neurospora chromosomes are organized by blocks of importin alpha-dependent heterochromatin that are largely independent of H3K9me3
    Genome Research 26(8):1069-80 (2016)

2015

  1. Adhvaryu KK, Gessaman JD, Honda S, Lewis ZA, Grisafi PL and Selker EU
    The Cullin-4 complex DCDC does not require key E3 ubiquitin ligase elements to control heterochromatin in Neurospora
    Eukaryotic Cell 14: 25-8 (2015)

2013

  1. Qi X, Li Y, Honda S, Hoffmann S, Marz M, Mosig A, Podlevsky JD, Stadler PF, Selker EU and Chen JJ
    The common ancestral core of vertebrate and fungal telomerease RNAs
    Nucleic Acids Research 41: 450-62 (2013)

2012

  1. Honda S, Lewis ZA, Shimada K, Fischle W, Sack R and Selker EU
    Heterochromatin Protein 1 forms distinct complexes to direct histone deacetylation and DNA methylation
    Nature Structural & Molecular Biology 19: 471-7 (2012)

2010

  1. Lewis ZA, Adhvaryu KK, Honda S, Shiver AL, Knip M, Sack R and Selker EU
    DNA methylation and normal chromosome behavior in Neurospora depend on five components of a histone methyltransferasecomplex, DCDC
    PLoS Genetics 6(11): e1001196 (2010)
  2. Lewis ZA, Adhvaryu KK, Honda S, Shiver AL and Selker EU
    Identification of DIM-7, a protein required to target the DIM-5 H3 methyltransferase to chromatin
    Proceedings of the National Academy of Sciences 107: 8310-5 (2010)
  3. Honda S, Lewis ZA, Huarte M, Cho LY, David LL, Shi Y and Selker EU
    The DMM complex prevents spreading of DNA methylation from transposons to nearby genes in Neurospora crassa
    Genes and Development 24: 443-54 (2010)

2009

  1. Honda S and Selker EU
    Tools for fungal proteomics: Multifunctional Neurospora vectors for gene replacement, protein expression and protein purification
    Genetics 182: 11-21;23 (2009)
  2. Aihara T, Nakamura N, Honda S and Hirose S
    A Novel Potential Role for Gametogenetin-Binding Protein1 (GGNBP1) in Mitochondrial Morphogenesis During Spermatogenesis of Mice
    Biology of Reproduction 80: 762-70 (2009)
  3. Lewis ZA, Honda S, Khlafallah TK, Jeffress JK, Freitag M, Mohn F, Schubeler D and Selker EU
    Relics of repeat-induced point mutation direct heterochromatin formation in Neurospora crassa
    Genome Research 19: 427-37 (2009)

2008

  1. Honda S and Selker EU
    Direct interaction between DNA methyltransferase DIM-2 and HP1 is required for DNA methylation in Neurospora crassa
    Molecular and Cellular Biology 28: 6044-55 (2008)

2006

  1. Nakamura N, Kimura Y, Tokuda M, Honda S and Hirose S
    MARCH-V is a novel mitofusion 2- and Drp1-binding protein able to change mitochondrial morphology
    EMBO reports 7: 1019-22 (2006)

2005

  1. Honda S, Aihara T, Hontani M, Okubo K and Hirose S
    Mutational analysis of action of mitochondrial fusionfactor mitofusin-2
    Journal of Cell Science 118: 3153-61 (2005)

2004

  1. Mistry AC, Kato A, Tran YH, Honda S, Tsukada T, Takei Y and Hirose S
    FHL5, a novel actin-binding protein, is highly expressed in eel gill pillar cells and responds to wall tension
    American Journal of Physiology 311: 424-32 (2004)

2003

  1. Honda S and Hirose S
    Stage-specific enhanced expression of mitochondrial fusion and fission factors during spermatogenesis in rat testis
    Biochemical and Biophysical Research Communications 287: R1141-54 (2003)

2002

  1. Miyamoto K, Nakamura N, Kashiwagi M, Honda S, Kato A, Hasegawa S, Takei Y and Hirose S
    RING finger, B-box, and coiled-coil (RBCC) protein expression in branchial epithelial cells of Japanese eel, Anguilla japonica
    European Journal of Biochemistry 269: 6152-61 (2002)

2001

  1. Ookata K, Tojo A, Onozato ML, Kashiwagi M, Honda S and Hirose S
    Distribution of stanniocalcin 1 in rat kidney and its regulation by vitamin D3
    Experimental Nephrology9: 428-35 (2001)
  2. Mistry AC, Honda S and Hirose S
    Structure, properties and enhanced expression of galactose-binding C-type lectins in mucous cells of gills from freshwaterJapaneseeels (Anguilla japonica)
    Biochemical Journal 360: 107-15 (2001)
  3. Mistry AC,Honda S, Hirata T, Kato A and Hirose S
    Eel urea transporter is localized to chloride cells and is salinity dependent
    American Journal of Physiology 281: R1594-604 (2001)

2000

  1. Honda S, Kashiwagi M, Miyamoto K, Takei Y and Hirose S
    Multiplicity, structures, and endocrine and exocrine natures of eel fucose-binding lectins
    Journal of Biological Chemistry 275: 33151-7 (2000)

1999

  1. Honda S, Kashiwagi M, Ookata K, Tojo A and Hirose S
    Regulation by 1alpha,25-dihydroxyvitamin D3of expression of stanniocalcin messages in the rat kidney and ovary
    FEBS Letters 459: 119-22 (1999)

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